林勇欣 副教授 國立陽明交通大學 生物資訊及系統生物研究所

Yeong-Shin Lin, Associate Professor
Institute of Bioinformatics and Systems Biology
National Yang Ming Chiao Tung University
Hsinchu, Taiwan
Main Page Lab Members Lectures Resources Bioinformatics Center



演化生物學 Evolutionay Biology

Time:13:20 ~ 16:20 on Monday
Room:博愛校區 賢齊館 BI302
Textbook:"Evolutionary Analysis" by Herron, J.C. & Freeman, S., 2015. Ed. 5. Pearson.
Grading:期初指定一篇論文,學生利用上課學習到的知識,於期中時繳交論文摘要[用自己的話(中文)重新闡述論文內容],學期末繳交論文讀後心得報告。
期中報告 30%,期末報告 30%,期末考 40%
Assigned paper:Vaishnav et al. (2022). The evolution, evolvability and engineering of gene regulatory DNA. Nature. 603: 455-463.
Office hour:15:00 ~ 17:00 on Tuesday
TA:
Reference: 課本網站 http://www.pearsonhighered.com/educator/product/Evolutionary-Analysis/9780321616678.page
物種原始 http://www.talkorigins.org/faqs/origin.html

9/12A case for evolutionary thinking: Understanding HIVPPT
9/19The pattern of evolutionPPT
9/19Evolution by natural selectionPPT
9/26Estimating evolutionary treesPPT
10/3Variation among individualsPPT
10/17Mendelian genetics in populations I: Selection and mutationPPT
10/24Mendelian genetics in populations II: Migration, drift, and nonrandom matingPPT
10/31Evolution at multiple loci: linkage and sex
期中報告
PPT
11/7Evolution at multiple loci: Quantitative geneticsPPT
11/14Studying adaptation: Evolutionary analysis of form and functionPPT
11/21Sexual selectionPPT
11/28The evolution of social behaviorPPT
12/5Aging and other life history charactersPPT
12/12Evolution and human health
Genome evolution and the molecular basis of adaptation
PPT
PPT
12/19Mechanisms of speciationPPT
12/26期末考
期末報告


1/2The origins of life and Precambrian evolution
Evolution and the fossil record
PPT
PPT
1/9Development and evolution
Human evolution
PPT
PPT





遺傳學 Genetics

Time:R34 F2
Room:科學三館 SC151
Textbook:"Genetics - Analysis & Principles" 5th Edition by Robert J. Brooker, McGraw-Hill international
"Genetics - From genes to genomes" 6th Edition by Leland H. Hartwell et al., McGraw-Hill international
Grading:隨堂作業 50%,open book exam 50%
Office hour:15:00 ~ 17:00 on Tuesday
TA:
Reference: 課本網站 http://www.mcgrawhill.ca/highereducation/products/9780073525280/

10/14; 10/20 Digital Analysis of DNA / [Genetics - From genes to genomes - chapter 9]
GENOMICS I: ANALYSIS OF DNA / [Genetics - Analysis & principles - chapter 22]
PPT
10/21; 10/27 Genome Annotation / [Genetics - From genes to genomes - chapter 10]
GENOMICS I: ANALYSIS OF DNA / [Genetics - Analysis & principles - chapter 22]
10/28; 11/3 Analyzing Genomic Variation / [Genetics - From genes to genomes - chapter 11]
GENOMICS I: ANALYSIS OF DNA / [Genetics - Analysis & principles - chapter 22]
11/4; 11/10 Variation and Selection in Populations / [Genetics - From genes to genomes - chapter 21]
POPULATION GENETICS / [Genetics - Analysis & principles - chapter 26]
PPT
11/11; 11/17 The Genetics of Complex Traits / [Genetics - From genes to genomes - chapter 22]
QUANTITATIVE GENETICS / [Genetics - Analysis & principles - chapter 27]
PPT
11/18Final Examination





普通生物學(一) General Biology (I)

Time:M34 W5
Room:科學三館 SC106(M34), 科學一館 SA320(W5)
Textbook:"Biology, 12th Edition" by Campbell, Urry, Cain, Wasserman, Minorsky, and Orr; Pearson 2021
Grading:期末考 33%
Office hour:15:00 ~ 17:00 on Tuesday
TA:

11/21, 11/23The evolution of genomes PPT
11/28, 11/30How evolution works
Microevolution
PPT
PPT
12/5, 12/7Species and speciation
(12/7 全校運動會)
PPT
12/12, 12/14Phylogenetic reconstruction PPT
12/19, 12/21Macroevolution PPT
12/28Final Examination



普通生物學(一) General Biology (I)

Time:W6 R56
Room:科學一館 SA320
Textbook:"Biology, 12th Edition" by Campbell, Urry, Cain, Wasserman, Minorsky, and Orr; Pearson 2021
Grading:期末考 33%
Office hour:15:00 ~ 17:00 on Tuesday
TA:

11/23, 11/24The evolution of genomes PPT
11/30, 12/1How evolution works
Microevolution
PPT
PPT
12/7, 12/8Species and speciation
(12/7 全校運動會)
PPT
12/14, 12/15Phylogenetic reconstruction PPT
12/21, 12/22Macroevolution PPT
12/28Final Examination



Contact

Office:+886-3-5712121 # 56960
Fax:+886-3-5729288
+886-3-5712121 # 56960
Email:yslinnycu.edu.tw
Address:新竹市博愛街75號
賢齊館 415室
R415, Jan Qi Building, 75 Po-Ai Street, Hsinchu, Taiwan 30068


Lab:+886-3-5712121 # 56961

Lectures

普通生物學(一)
General Biology (I)


計算生物實驗
Computational Biology Lab.

遺傳學
Genetics


演化生物學
Evolutionary Biology


分子演化
Molecular Evolution

Links

NCBI
EnsEMBL
Genome OnLine Database
Approved Sequencing Targets
UCSC Genome Bioinformatics
Stanford Genomic Resources
TGI - The Gene Index
J. Craig Venter Institute
Broad Institute
HapMap
SGD
SMD
MIPS
RCSB PDB
SCOP
ExPASy - SwissProt - PROSITE
CE - Combinatorial Extension
RepeatMasker

MEGA
PAUP
PAML
PhyML
CONSEL
MacClade
MrBayes
DAMBE
LiKaKs
Structure (population)
DnaSP
Arlequin
MCL - a cluster algorithm for graphs
The R Manuals
SimpleR
Chi-square Test
Fisher's Exact Test
Kolmogorov-Smirnov Test

Nature
Science
PNAS
PLoS Biology
Current Biology
Cell
EMBO
Nature Ecology & Evolution
Nature Genetics
Nature Biotechnology
Trends in Genetics
Genome Research
Genome Biology
Molecular Biology & Evolution
Nucleic Acids Research
Genetics
Evolution
Bioinformatics
Journal of Molecular Biology
Journal of Molecular Evolution
MPE
Proteins
Gene

國科會
Journal Citation Reports
政府電子採購網
Main Page Lab Members Lectures Resources Bioinformatics Center