林勇欣 副教授 國立陽明交通大學 生物資訊及系統生物研究所

Yeong-Shin Lin, Associate Professor
Institute of Bioinformatics and Systems Biology
National Yang Ming Chiao Tung University
Hsinchu, Taiwan
Main Page Lab Members Lectures Resources Bioinformatics Center



演化生物學 Evolutionay Biology

Time:M567
Room:博愛校區 賢齊館 BI302
Textbook:"Evolutionary Analysis" by Herron, J.C. & Freeman, S., 2015. Ed. 5. Pearson.
Grading:期初指定一篇論文,學生利用上課學習到的知識,於期中時繳交期中報告,內容包含(1)條列式論文重點摘要[附中文說明]、(2)整理自己未讀懂之處、(3)想對作者提出的問題;學期末繳交期末報告,內容為論文讀後心得,可包含對自己期中報告的補充或答覆。期末開書考,限紙本資料。
期中報告 30%,期末報告 30%,期末考 40%
Assigned paper:Hunt et al. (2024). The evolution of democratic peace in animal societies. Nature Communications. 15: 6583.
Office hour:15:00 ~ 17:00 on Tuesday
TA:
Reference: 課本網站 http://www.pearsonhighered.com/educator/product/Evolutionary-Analysis/9780321616678.page
物種原始 http://www.talkorigins.org/faqs/origin.html

9/2A case for evolutionary thinking: Understanding HIVPPT
9/9The pattern of evolutionPPT
9/9Evolution by natural selectionPPT
9/16Estimating evolutionary treesPPT
9/23Variation among individualsPPT
9/30Mendelian genetics in populations I: Selection and mutationPPT
10/7Mendelian genetics in populations II: Migration, drift, and nonrandom matingPPT
10/14Evolution at multiple loci: linkage and sexPPT
10/21Evolution at multiple loci: Quantitative genetics
期中報告
PPT
10/28Studying adaptation: Evolutionary analysis of form and functionPPT
11/4Sexual selectionPPT
11/11The evolution of social behaviorPPT
11/18Aging and other life history charactersPPT
11/25Evolution and human healthPPT
12/2Genome evolution and the molecular basis of adaptationPPT
12/9Mechanisms of speciationPPT
12/16期末考
期末報告







遺傳學 Genetics

Time:T234
Room:博愛校區 賢齊館 BI301
Textbook:"Genetics - Analysis & Principles" 5th Edition by Robert J. Brooker, McGraw-Hill international
"Genetics - From genes to genomes" 6th Edition by Leland H. Hartwell et al., McGraw-Hill international
Grading:隨堂作業 100%
Office hour:15:00 ~ 17:00 on Tuesday
TA:
Reference: 課本網站 http://www.mcgrawhill.ca/highereducation/products/9780073525280/

11/19 Digital Analysis of DNA / [Genetics - From genes to genomes - chapter 9]
GENOMICS I: ANALYSIS OF DNA / [Genetics - Analysis & principles - chapter 22]
11/26 Genome Annotation / [Genetics - From genes to genomes - chapter 10]
GENOMICS I: ANALYSIS OF DNA / [Genetics - Analysis & principles - chapter 22]
12/3 Analyzing Genomic Variation / [Genetics - From genes to genomes - chapter 11]
GENOMICS I: ANALYSIS OF DNA / [Genetics - Analysis & principles - chapter 22]
12/10 Variation and Selection in Populations / [Genetics - From genes to genomes - chapter 21]
POPULATION GENETICS / [Genetics - Analysis & principles - chapter 26]
12/17 The Genetics of Complex Traits / [Genetics - From genes to genomes - chapter 22]
QUANTITATIVE GENETICS / [Genetics - Analysis & principles - chapter 27]





普通生物學(一) General Biology (I)

Time:Wn56
Room:光復校區 科學一館 SA320
Textbook:"Biology, 12th Edition" by Campbell, Urry, Cain, Wasserman, Minorsky, and Orr; Pearson 2021
Grading:隨堂作業 100%
Office hour:15:00 ~ 17:00 on Tuesday
TA:

11/13The evolution of genomes
11/27How evolution works
Microevolution

12/4Species and speciation
12/11Phylogenetic reconstruction
12/18Macroevolution



Contact

Office:+886-3-5712121 # 56960
Fax:+886-3-5729288
+886-3-5712121 # 56960
Email:yslinnycu.edu.tw
Address:新竹市博愛街75號
賢齊館 415室
R415, Jan Qi Building, 75 Po-Ai Street, Hsinchu, Taiwan 30068


Lab:+886-3-5712121 # 56961

Lectures

普通生物學(一)
General Biology (I)


計算生物實驗
Computational Biology Lab.

遺傳學
Genetics


生物多樣性與生態
Biodiversity and Ecology

演化生物學
Evolutionary Biology


分子演化
Molecular Evolution

Links

NCBI
EnsEMBL
Genome OnLine Database
Approved Sequencing Targets
UCSC Genome Bioinformatics
Stanford Genomic Resources
TGI - The Gene Index
J. Craig Venter Institute
Broad Institute
HapMap
SGD
SMD
MIPS
RCSB PDB
SCOP
ExPASy - SwissProt - PROSITE
CE - Combinatorial Extension
RepeatMasker

MEGA
PAUP
PAML
PhyML
CONSEL
MacClade
MrBayes
DAMBE
LiKaKs
Structure (population)
DnaSP
Arlequin
MCL - a cluster algorithm for graphs
The R Manuals
SimpleR
Chi-square Test
Fisher's Exact Test
Kolmogorov-Smirnov Test

Nature
Science
PNAS
PLoS Biology
Current Biology
Cell
EMBO
Nature Ecology & Evolution
Nature Genetics
Nature Biotechnology
Trends in Genetics
Genome Research
Genome Biology
Molecular Biology & Evolution
Nucleic Acids Research
Genetics
Evolution
Bioinformatics
Journal of Molecular Biology
Journal of Molecular Evolution
MPE
Proteins
Gene

國科會
Journal Citation Reports
政府電子採購網
Main Page Lab Members Lectures Resources Bioinformatics Center